Lectures: Wednesdays and Fridays from 8:45 to 10:00, Room CC-115
Tutorials: Mondays, Tuesdays, Wednesdays, Thursdays from 13:15 to 14:30; Tuesdays from 18:00 to 19:15
For more information, see the syllabus.
Lectures: Tuesdays and Fridays from 8:45 to 10:00, Room CC-312
Labs: Mondays from 13:30 to 17:30, Thursdays from 18:30 to 22:30, Room SP-220
For more information, see the syllabus.
Lectures: Tuesdays from 18:00 to 20:30, Room CC-106
Labs: Wednesdays from 18:30 to 22:30, Thursdays from 13:30 to 17:30, Room SP-320
For more information, see the syllabus.
Lectures/Labs: Wednesdays from 18:00 to 22:00, Room CC-203
This course offers a hands-on introduction to the computer tools used to predict the structure of a protein from its amino acid sequence, and to get insight into its function. The student will learn modelling techniques such as sequence alignment, homology modelling, computer visualization, molecular dynamics, and molecular docking. Computer laboratory with pre-lab lectures.
For more information, see the syllabus.
Tutorials and overheads:
Introduction: Overheads
#1a: Protein sequence alignment (+ overheads)
#1b: Comparison and validation of alignments (+ overheads)
#1c: Protein visualization (+ overheads)
#2a: Homology modelling 1 (+ overheads)
#2b: Homology modelling 2
#2c: Comparison/validation of models (+ overheads)
#3a: Empirical force fields (+ overheads)
#3b: Molecular dynamics: Simple systems (+ overheads)
#4a: Molecular dynamics: Setup (+ overheads)
#4b: Molecular dynamics: Analysis
#5: Molecular docking (+ overheads)
Sequences:
01
02
03
04
05
06
07
08
09
10
11
Lectures: Tuesdays and Thursdays from 10:15 to 13:00
For more information, see the syllabus.
Lecture notes:
Part 1: Fundamentals
Part 2: Ideal systems
Part 3: Read gases and liquids ("Molecular dynamics" section only)
Part 4: Phase transitions
Part 5: Nonequilibrium statistical mechanics
See Positions.